This queue is for tickets about the Bio-SamTools CPAN distribution.

Maintainer(s)

LDS

Bugs

IDSubjectStatusSeverityLast UpdatedBroken inFixed in
116683 Bio-SamTools-1.43 is confused about what various SAMtools build dirs supply where - and so am I new 5 years ago
116702 Re: Bio-SamTools-1.43 is confused about what various SAMtools build dirs supply where - and so am I new 5 years ago
110409 Module v1.4.2 bug new 5 years ago
81949 Documentation bug open 6 years ago
101733 bam2bedgraph compile error (Fedora 21, stock gcc, etc.) open 6 years ago
101735 Bio::DB:Sam won't read a particular BAM file open 6 years ago
105418 Compile error under CentOS 6.6 open 6 years ago
98692 Feature request: support for samtools v1.0 open 6 years ago
106384 Bio-SamTools run error open 6 years ago
101438 CIGAR parsing error in Bio::DB::Sam new 6 years ago
89192 feature request: accessor for low level Alignment in AlignmentWrapper new 8 years ago
88947 Re: Suggested patch for installation failure to find samtools headers in include/bam/ path new 8 years ago
87175 Bio::DB::Sam problems new 8 years ago
86069 Suggested patch for installation failure to find samtools headers in include/bam/ path new 8 years ago
84656 Trouble installing BIo:DB:SAM tools new 8 years ago
83974 max_pileup_cnt should be raised for coverage2bedGraph new Important 8 years ago
  • 1.31
  • 1.32
  • 1.33
  • 1.35
  • 1.36
  • 1.37
81118 Test failed for Bio::DB::Sam new Important 8 years ago 1.36
80688 behaviour of qpos in deletion regions new Wishlist 8 years ago 1.36
76279 -filter option doesn't function as documented (deprecated AUTOLOAD) new Important 9 years ago 1.33
73781 Debian binary-without-manpage lintian warning new Wishlist 9 years ago 1.33
73737 Allow calmd be called on an Alignment? new Wishlist 9 years ago
69903 Coverage and pileup functions corrupted by samtools core open Critical 10 years ago 1.29
68400 Uninstalling old version of Bio::DB::Sam new 10 years ago
66387 Need to process CIGAR N in dna function new 10 years ago
66209 Suggested change to coverage_from_pileup_fun in Sam.xs new 10 years ago
66138 _coverage function should not count reads that skip the input region new 10 years ago
57143 Deletions in Pileup new 11 years ago
54562 Bio::DB::Sam segfaults when reading a BAM file without reading the header first new Important 11 years ago 1.10
54411 Re: CQ tag bug new 11 years ago
54392 CQ tag bug new 11 years ago
53705 $index undefined prior to coverage call new 11 years ago
52905 Bio::DB::Sam objects crashes threads new 11 years ago
52363 Inconsistent return values in Bio::DB::Sam->features method new 11 years ago 1.07
51485 Missing character->value conversion in example SNP caller? new 11 years ago
50532 Sam.pm croaks wrong path if not -e $bam_path open 11 years ago
50653 Error in gbrowse2: Method abs_ref missing new Unimportant 12 years ago 1.05
49986 seq_ids returns only lower-case entry names open 12 years ago

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