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This queue is for tickets about the bioperl CPAN distribution.

Maintainer(s)

BIRNEY, bosborne, CDIESH, CDRAUG, cjfields, CRAFFI, MAJENSEN, SENDU, STAJICH

Bugs

ID Subject Status Severity Last Updated Broken in Fixed in
119235 Bio/Coordinate/Pair.pm removed from BioPerl in version 1.00070001 resolved 2 years ago
124998 precedence error in Bio::DB::IndexedBase.pm resolved 2 years ago 1.7.3
127315 Remove Bio::SeqIO::entrezgene from BioPerl resolved Critical 2 years ago 1.7.0._2 1.7.3
128422 Wrong metadata (repository, issues) resolved 2 years ago 1.7.3
88102 bioperl: FTBFS with perl 5.18: test failures resolved 4 years ago
103272 Typename.pm Bug: method:source doesnt allow period character resolved 4 years ago
105292 CGI.pm, new dependency for BioPerl with Perl v5.22 resolved Critical 4 years ago 1.6.924
98374 A bug in Bio::AlignIO::fasta resolved 4 years ago
106756 Can't redeclare "my" in "my" (test fails with perl 5.23.2) resolved 4 years ago 1.6.924
91880 Some tests fail with "Can't store CODE items" error resolved 4 years ago 1.6.923
98876 Bio::SeqIO::fastq has a bug resolved 4 years ago
92584 Add reason for failure of file IO in various files resolved Normal 4 years ago
78524 Fwd: t/PodSyntax.t failure: missing resolved 4 years ago
82928 SeqIO.t fails resolved Important 6 years ago 1.6.901
91691 tests fail on Windows resolved Normal 6 years ago 1.6.923 1.6.924
85175 tests fail due to hash randomization resolved Normal 7 years ago 1.6.901
58492 Synopsis of Bio::DB::SeqFeature::Store resolved Unimportant 10 years ago 1.6.1
54590 Bug with XML parser resolved 10 years ago
47704 Bio::SeqFeature::Collection 1.006000 resolved 10 years ago
58464 [patch] Clustalw, Primer3 and WrapperBase resolved Critical 10 years ago 1.6.1
54702 [PATCH] BioPerl installation 'technically unsuccessful' on Win32. resolved 10 years ago 1.6.1
49950 Win32 issue - Permission denied resolved 11 years ago
50048 Bio::SeqIO::tinyseq version not parsable by cpanplus resolved 11 years ago 1.6.0
48813 Win32 compatibility PATCH resolved 11 years ago 1.6.0
36480 Bug in Bio::Search::SearchUtils.pm resolved 12 years ago
38248 bug in Bio::Tools::Run::StandAloneBlast resolved 12 years ago
44535 BioPerl and GBrowse resolved 12 years ago
44782 Bio::SearchIO::Writer::Gbrowse e-value vs. score resolved Normal 12 years ago 1.6.0
44536 BioPerl, NCBI Eutilities genbank format resolved 12 years ago
12802 Documentation patch resolved Unimportant 12 years ago
17505 fails to install resolved Critical 12 years ago 1.4
29533 Bio::SeqIO::interpro depends on XML::DOM::XPath resolved Critical 12 years ago 1.5.2_102

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