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This queue is for tickets about the Bio-SamTools CPAN distribution.

Maintainer(s)

LDS

Bugs

ID Subject Status Severity Last Updated Broken in Fixed in
101735 Bio::DB:Sam won't read a particular BAM file new 6 weeks ago
101733 bam2bedgraph compile error (Fedora 21, stock gcc, etc.) new 6 weeks ago
101438 CIGAR parsing error in Bio::DB::Sam new 8 weeks ago
98692 Feature request: support for samtools v1.0 new 6 months ago
89192 feature request: accessor for low level Alignment in AlignmentWrapper new 1 years ago
88947 Re: Suggested patch for installation failure to find samtools headers in include/bam/ path new 1 years ago
87175 Bio::DB::Sam problems new 2 years ago
86069 Suggested patch for installation failure to find samtools headers in include/bam/ path new 2 years ago
84656 Trouble installing BIo:DB:SAM tools new 2 years ago
83974 max_pileup_cnt should be raised for coverage2bedGraph new Important 2 years ago 1.31
1.32
1.33
1.35
1.36
1.37
81949 Documentation bug new 2 years ago
81118 Test failed for Bio::DB::Sam new Important 2 years ago 1.36
80688 behaviour of qpos in deletion regions new Wishlist 2 years ago 1.36
76279 -filter option doesn't function as documented (deprecated AUTOLOAD) new Important 3 years ago 1.33
73781 Debian binary-without-manpage lintian warning new Wishlist 3 years ago 1.33
73737 Allow calmd be called on an Alignment? new Wishlist 3 years ago
69903 Coverage and pileup functions corrupted by samtools core open Critical 4 years ago 1.29
68400 Uninstalling old version of Bio::DB::Sam new 4 years ago
66387 Need to process CIGAR N in dna function new 4 years ago
66209 Suggested change to coverage_from_pileup_fun in Sam.xs new 4 years ago
66138 _coverage function should not count reads that skip the input region new 4 years ago
57143 Deletions in Pileup new 5 years ago
54562 Bio::DB::Sam segfaults when reading a BAM file without reading the header first new Important 5 years ago 1.10
54411 Re: CQ tag bug new 5 years ago
54392 CQ tag bug new 5 years ago
53705 $index undefined prior to coverage call new 5 years ago
52905 Bio::DB::Sam objects crashes threads new 5 years ago
52363 Inconsistent return values in Bio::DB::Sam->features method new 5 years ago 1.07
51485 Missing character->value conversion in example SNP caller? new 5 years ago
50532 Sam.pm croaks wrong path if not -e $bam_path open 5 years ago
50653 Error in gbrowse2: Method abs_ref missing new Unimportant 5 years ago 1.05
49986 seq_ids returns only lower-case entry names open 5 years ago

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