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Id: 89192
Status: new
Priority: 0/
Queue: Bio-SamTools

Owner: Nobody in particular
Requestors: fs5 [...]

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Subject: feature request: accessor for low level Alignment in AlignmentWrapper
Date: Wed, 02 Oct 2013 11:34:33 +0100
To: bug-Bio-SamTools [...]
From: Frank Schwach <fs5 [...]>
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would be great to have an accessor for the the low-level Alignment object in the AlignmentWrapper API. That would make it possible e.g. to write alignments into a new file while reading them using the high-level API. Alternatively, there could be an option in the high-level API to return low-level Alignment objects rather than AlignmentWrapper when querying for alignments. Cheers, Frank -- The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE.

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