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This queue is for tickets about the Bio-SamTools CPAN distribution.

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Id: 84656
Status: new
Priority: 0/
Queue: Bio-SamTools

Owner: Nobody in particular
Requestors: lalitha.viswanathan79 [...]

Bug Information
Severity: (no value)
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Fixed in: (no value)

Subject: Trouble installing BIo:DB:SAM tools
Date: Tue, 16 Apr 2013 13:21:59 +0530
To: bug-Bio-SamTools [...]
From: Lalitha Viswanathan <lalitha.viswanathan79 [...]>
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Hi I am trying to install Bio::DB::SAM tools version 1.37 on ubuntu 12,10 I have BioPerl 1.6 installed and working fine I installed samtools-0.1.19 as below a) make b) Then ran perl Build.PL in Bio::DB::SAM tools version 1.37 c) ./Build install throws below error /usr/bin/ld: /home/lalitha/Documents/samtools-0.1.19/libbam.a(bgzf.o): relocation R_X86_64_32S against `.rodata.str1.1' can not be used when making a shared object; recompile with -fPIC /home/lalitha/Documents/samtools-0.1.19/libbam.a: could not read symbols: Bad value collect2: error: ld returned 1 exit status error building blib/arch/auto/Bio/DB/Sam/ from lib/Bio/DB/Sam.o c_bin/bam2bedgraph.o at /usr/share/perl/5.14/ExtUtils/CBuilder/ line 312. d) Same error is encountered when building through cpan Any help will be appreciated Thanks Lalitha

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