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This queue is for tickets about the Bio-SamTools CPAN distribution.

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The Basics
Id: 76279
Status: new
Priority: 0/
Queue: Bio-SamTools

Owner: Nobody in particular
Requestors: kr2 [...]

Bug Information
Severity: Important
Broken in: 1.33
Fixed in: (no value)

Subject: -filter option doesn't function as documented (deprecated AUTOLOAD)
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Hi Lincoln, If you attempt to use the -filter option (as documented) when setting up a feature iterator to code fails to run with the following error. ##ERROR## Use of inherited AUTOLOAD for non-method Bio::DB::Sam::CODE() is deprecated at (eval 33) line 1. Can't locate auto/Bio/DB/Sam/ in @INC...... ##CODE## my $proper_pairs = $sam->features( -type=>'match', -iterator=>1, -filter=>sub {shift->qual > 80}, ); Regards, Keiran

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