Skip Menu |
 

This queue is for tickets about the Bio-SamTools CPAN distribution.

Report information
The Basics
Id: 76279
Status: new
Priority: 0/
Queue: Bio-SamTools

People
Owner: Nobody in particular
Requestors: kr2 [...] sanger.ac.uk
Cc:
AdminCc:

Bug Information
Severity: Important
Broken in: 1.33
Fixed in: (no value)



Subject: -filter option doesn't function as documented (deprecated AUTOLOAD)
Download (untitled) / with headers
text/plain 522b
Hi Lincoln, If you attempt to use the -filter option (as documented) when setting up a feature iterator to code fails to run with the following error. ##ERROR## Use of inherited AUTOLOAD for non-method Bio::DB::Sam::CODE() is deprecated at (eval 33) line 1. Can't locate auto/Bio/DB/Sam/CODE.al in @INC...... ##CODE## my $proper_pairs = $sam->features( -type=>'match', -iterator=>1, -filter=>sub {shift->qual > 80}, ); Regards, Keiran


This service is sponsored and maintained by Best Practical Solutions and runs on Perl.org infrastructure.

Please report any issues with rt.cpan.org to rt-cpan-admin@bestpractical.com.