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Id: 57577
Status: rejected
Priority: 0/
Queue: Math-GSL

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Owner: Nobody in particular
Requestors: intipedroso [...] gmail.com
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Subject: Bug installing Math::GSL, HELP PLEASE!!!!!
Date: Tue, 18 May 2010 12:19:55 +0100
To: bug-Math-Gsl [...] rt.cpan.org, Jonathan Leto <jonathan [...] leto.net>, Thierry Moisan <thierry.moisan [...] gmail.com>
From: inti pedroso <intipedroso [...] gmail.com>
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Dear, I am having trouble to install Math::GSL. I really want to use it. I had probems whne running perl Makefile.PL, which I solved by adding the path to the CORE header. Show quoted text
>sudo perl5.8.9 Makefile.PL
INC="/System/Library/Perl/5.8.9/darwin-thread-multi-2level/CORE" i found this on the bugs forums of the module. Then I changed the Build.PL at line 108, my %gsl_pkgcfg = ExtUtils::PkgConfig->find ('gsl'); into my %gsl_pkgcfg = ('modversion' => '1.13', 'cflags'=> '-I/usr/local/include', 'pkg' => 'gsl', 'libs' => '-L/usr/local/lib -lgsl -lgslcblas -lm' ); I took the information from the gsl-config because I do know why the ExtUtils::PkgConfig could not find it but I know it is there. Then I had problem when running ./Build Show quoted text
>sudo ./Build
Building Math-GSL i686-apple-darwin10-gcc-4.2.1: /System/Library/Perl/5.8.9/darwin-thread-multi-2level/CORE: linker input file unused because linking not done i686-apple-darwin10-gcc-4.2.1: -bundle not allowed with -dynamiclib error building blib/arch/auto/Math/GSL/BLAS/BLAS.bundle file from 'xs/BLAS_wrap.o' at inc/GSLBuilder.pm line 132. At this stage I just could not find out what the problem is, this goes beyond my Perl/computing knowledge. I have appended below the decription of the machine and of the perl I am using. I would be very very pleased if you could help me with this. thanks a lot for building the module and in advance for help in getting it running. Best Regards, Inti Pedroso. €€€€€€€€€€€€€€€€€ Show quoted text
>uname -a
Darwin shiva.iop.kcl.ac.uk 10.3.0 Darwin Kernel Version 10.3.0: Fri Feb 26 11:57:13 PST 2010; root:xnu-1504.3.12~1/RELEASE_X86_64 x86_64 €€€€€€€€€€€€€€€€€€€€€€€€€ Show quoted text
>perl5.8.9 -V
Summary of my perl5 (revision 5 version 8 subversion 9) configuration: Platform: osname=darwin, osvers=10.0, archname=darwin-thread-multi-2level uname='darwin neige.apple.com 10.0 darwin kernel version 10.0.0d8: tue may 5 19:29:59 pdt 2009; root:xnu-1437.2~2release_i386 i386 ' config_args='-ds -e -Dprefix=/usr -Dccflags=-g -pipe -Dldflags= -Dman3ext=3pm -Duseithreads -Duseshrplib -Dinc_version_list=none -Dcc=gcc-4.2' hint=recommended, useposix=true, d_sigaction=define usethreads=define use5005threads=undef useithreads=define usemultiplicity=define useperlio=define d_sfio=undef uselargefiles=define usesocks=undef use64bitint=define use64bitall=define uselongdouble=undef usemymalloc=n, bincompat5005=undef Compiler: cc='gcc-4.2', ccflags ='-arch i386 -arch ppc -g -pipe -fno-common -DPERL_DARWIN -fno-strict-aliasing -I/usr/local/include', optimize='-Os', cppflags='-g -pipe -fno-common -DPERL_DARWIN -fno-strict-aliasing -I/usr/local/include' ccversion='', gccversion='4.2.1 (Apple Inc. build 5646)', gccosandvers='' intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=1234 d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16 ivtype='long', ivsize=4, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8 alignbytes=8, prototype=define Linker and Libraries: ld='gcc-4.2 -mmacosx-version-min=10.6', ldflags ='-arch i386 -arch ppc -L/usr/local/lib' libpth=/usr/local/lib /usr/lib libs=-ldbm -ldl -lm -lutil -lc perllibs=-ldl -lm -lutil -lc libc=/usr/lib/libc.dylib, so=dylib, useshrplib=true, libperl=libperl.dylib gnulibc_version='' Dynamic Linking: dlsrc=dl_dlopen.xs, dlext=bundle, d_dlsymun=undef, ccdlflags=' ' cccdlflags=' ', lddlflags='-arch i386 -arch ppc -bundle -undefined dynamic_lookup -L/usr/local/lib' Characteristics of this binary (from libperl): Compile-time options: MULTIPLICITY PERL_IMPLICIT_CONTEXT PERL_MALLOC_WRAP USE_FAST_STDIO USE_ITHREADS USE_LARGE_FILES USE_PERLIO USE_REENTRANT_API Locally applied patches: /Library/Perl/Updates/<version> comes before system perl directories installprivlib and installarchlib points to the Updates directory 6576362: fixed 5.8.9 binary compatibility issue: perlio mutex not initialized Built under darwin Compiled at Jun 24 2009 00:35:17 %ENV: PERL5LIB=":/Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl-live/:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl-compara/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl-variation/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl-functgenomics/modules:/Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl-live/:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl-compara/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl-variation/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl-functgenomics/modules:/Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl-live/:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl-compara/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl-variation/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl-functgenomics/modules:/Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl-live/:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl-compara/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl-variation/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl-functgenomics/modules:/Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl-live/:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl-compara/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl-variation/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl-functgenomics/modules:/Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl-live/:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl-compara/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl-variation/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl-functgenomics/modules:/Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl-live/:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl-compara/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl-variation/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl-functgenomics/modules" @INC: /Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl-live/ /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl-compara/modules /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl-variation/modules /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl-functgenomics/modules /Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl-live/ /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl-compara/modules /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl-variation/modules /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl-functgenomics/modules /Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl-live/ /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl-compara/modules /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl-variation/modules /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl-functgenomics/modules /Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl-live/ /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl-compara/modules /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl-variation/modules /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl-functgenomics/modules /Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl-live/ /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl-compara/modules /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl-variation/modules /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl-functgenomics/modules /Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl-live/ /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl-compara/modules /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl-variation/modules /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl-functgenomics/modules /Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl-live/ /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl-compara/modules /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl-variation/modules /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl-functgenomics/modules /Library/Perl/Updates/5.8.9/darwin-thread-multi-2level /Library/Perl/Updates/5.8.9 /System/Library/Perl/5.8.9/darwin-thread-multi-2level /System/Library/Perl/5.8.9 /Library/Perl/5.8.9/darwin-thread-multi-2level /Library/Perl/5.8.9 /Network/Library/Perl/5.8.9/darwin-thread-multi-2level /Network/Library/Perl/5.8.9 /Network/Library/Perl /System/Library/Perl/Extras/5.8.9/darwin-thread-multi-2level /System/Library/Perl/Extras/5.8.9 /Library/Perl/5.8.8 /Library/Perl/5.8.6 /Library/Perl/5.8.1 . €€€€€€€€€€€€€€€€€€ -- Social, Genetic and Developmental Psychiatry PhD programme, NIHR BRC for Mental Health; MRC SGDP Research Centre (PO82), Institute of Psychiatry, Kings College London. SE5 8AF, London, UK. Inti.PedrosoRovira@iop.kcl.ac.uk
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Howdy, I don't think modifying INC like that is going to solve the problem. It looks like you have many Perls installed and they are stepping on each others feet. Can you remove that INC variable and attach a full run of "perl Build.PL" and "make test" to this ticket? Duke On Tue May 18 07:20:13 2010, intipedroso@gmail.com wrote: Show quoted text
> Dear, > I am having trouble to install Math::GSL. I really want to use it. > I had probems whne running perl Makefile.PL, which I solved by adding > the > path to the CORE header.
> >sudo perl5.8.9 Makefile.PL
> INC="/System/Library/Perl/5.8.9/darwin-thread-multi-2level/CORE" > i found this on the bugs forums of the module. Then I changed the > Build.PL > at line 108, > my %gsl_pkgcfg = ExtUtils::PkgConfig->find ('gsl'); > into > my %gsl_pkgcfg = ('modversion' => '1.13', 'cflags'=> '- > I/usr/local/include', > 'pkg' => 'gsl', 'libs' => '-L/usr/local/lib -lgsl -lgslcblas -lm' ); > > I took the information from the gsl-config because I do know why the > ExtUtils::PkgConfig could not find it but I know it is there. > Then I had problem when running ./Build >
> >sudo ./Build
> Building Math-GSL > i686-apple-darwin10-gcc-4.2.1: > /System/Library/Perl/5.8.9/darwin-thread-multi-2level/CORE: linker > input > file unused because linking not done > i686-apple-darwin10-gcc-4.2.1: -bundle not allowed with -dynamiclib > error building blib/arch/auto/Math/GSL/BLAS/BLAS.bundle file from > 'xs/BLAS_wrap.o' at inc/GSLBuilder.pm line 132. > > At this stage I just could not find out what the problem is, this goes > beyond my Perl/computing knowledge. > I have appended below the decription of the machine and of the perl I > am > using. > > I would be very very pleased if you could help me with this. thanks a > lot > for building the module and in advance for help in getting it running. > > Best Regards, > Inti Pedroso. > > > €€€€€€€€€€€€€€€€€
> >uname -a
> Darwin shiva.iop.kcl.ac.uk 10.3.0 Darwin Kernel Version 10.3.0: Fri > Feb 26 > 11:57:13 PST 2010; root:xnu-1504.3.12~1/RELEASE_X86_64 x86_64 > > €€€€€€€€€€€€€€€€€€€€€€€€€
> >perl5.8.9 -V
> Summary of my perl5 (revision 5 version 8 subversion 9) configuration: > Platform: > osname=darwin, osvers=10.0, archname=darwin-thread-multi-2level > uname='darwin neige.apple.com 10.0 darwin kernel version 10.0.0d8: > tue > may 5 19:29:59 pdt 2009; root:xnu-1437.2~2release_i386 i386 ' > config_args='-ds -e -Dprefix=/usr -Dccflags=-g -pipe -Dldflags= > -Dman3ext=3pm -Duseithreads -Duseshrplib -Dinc_version_list=none > -Dcc=gcc-4.2' > hint=recommended, useposix=true, d_sigaction=define > usethreads=define use5005threads=undef useithreads=define > usemultiplicity=define > useperlio=define d_sfio=undef uselargefiles=define usesocks=undef > use64bitint=define use64bitall=define uselongdouble=undef > usemymalloc=n, bincompat5005=undef > Compiler: > cc='gcc-4.2', ccflags ='-arch i386 -arch ppc -g -pipe -fno-common > -DPERL_DARWIN -fno-strict-aliasing -I/usr/local/include', > optimize='-Os', > cppflags='-g -pipe -fno-common -DPERL_DARWIN -fno-strict-aliasing > -I/usr/local/include' > ccversion='', gccversion='4.2.1 (Apple Inc. build 5646)', > gccosandvers='' > intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=1234 > d_longlong=define, longlongsize=8, d_longdbl=define, > longdblsize=16 > ivtype='long', ivsize=4, nvtype='double', nvsize=8, Off_t='off_t', > lseeksize=8 > alignbytes=8, prototype=define > Linker and Libraries: > ld='gcc-4.2 -mmacosx-version-min=10.6', ldflags ='-arch i386 -arch > ppc > -L/usr/local/lib' > libpth=/usr/local/lib /usr/lib > libs=-ldbm -ldl -lm -lutil -lc > perllibs=-ldl -lm -lutil -lc > libc=/usr/lib/libc.dylib, so=dylib, useshrplib=true, > libperl=libperl.dylib > gnulibc_version='' > Dynamic Linking: > dlsrc=dl_dlopen.xs, dlext=bundle, d_dlsymun=undef, ccdlflags=' ' > cccdlflags=' ', lddlflags='-arch i386 -arch ppc -bundle -undefined > dynamic_lookup -L/usr/local/lib' > > > Characteristics of this binary (from libperl): > Compile-time options: MULTIPLICITY PERL_IMPLICIT_CONTEXT > PERL_MALLOC_WRAP > USE_FAST_STDIO USE_ITHREADS USE_LARGE_FILES > USE_PERLIO USE_REENTRANT_API > Locally applied patches: > /Library/Perl/Updates/<version> comes before system perl > directories > installprivlib and installarchlib points to the Updates directory > 6576362: fixed 5.8.9 binary compatibility issue: perlio mutex not > initialized > Built under darwin > Compiled at Jun 24 2009 00:35:17 > %ENV: > > PERL5LIB=":/Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl- >
live/:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- Show quoted text
>
compara/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- Show quoted text
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variation/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- Show quoted text
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functgenomics/modules:/Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl- Show quoted text
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live/:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- Show quoted text
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compara/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- Show quoted text
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variation/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- Show quoted text
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functgenomics/modules:/Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl- Show quoted text
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live/:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- Show quoted text
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compara/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- Show quoted text
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variation/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- Show quoted text
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functgenomics/modules:/Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl- Show quoted text
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live/:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- Show quoted text
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compara/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- Show quoted text
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variation/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- Show quoted text
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functgenomics/modules:/Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl- Show quoted text
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live/:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- Show quoted text
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compara/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- Show quoted text
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variation/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- Show quoted text
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functgenomics/modules:/Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl- Show quoted text
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live/:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- Show quoted text
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compara/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- Show quoted text
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variation/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- Show quoted text
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functgenomics/modules:/Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl- Show quoted text
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live/:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- Show quoted text
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compara/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- Show quoted text
>
variation/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- Show quoted text
> functgenomics/modules" > @INC: > /Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl-live/ > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > compara/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > variation/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > functgenomics/modules > /Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl-live/ > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > compara/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > variation/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > functgenomics/modules > /Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl-live/ > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > compara/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > variation/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > functgenomics/modules > /Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl-live/ > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > compara/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > variation/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > functgenomics/modules > /Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl-live/ > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > compara/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > variation/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > functgenomics/modules > /Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl-live/ > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > compara/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > variation/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > functgenomics/modules > /Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl-live/ > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > compara/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > variation/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > functgenomics/modules > /Library/Perl/Updates/5.8.9/darwin-thread-multi-2level > /Library/Perl/Updates/5.8.9 > /System/Library/Perl/5.8.9/darwin-thread-multi-2level > /System/Library/Perl/5.8.9 > /Library/Perl/5.8.9/darwin-thread-multi-2level > /Library/Perl/5.8.9 > /Network/Library/Perl/5.8.9/darwin-thread-multi-2level > /Network/Library/Perl/5.8.9 > /Network/Library/Perl > /System/Library/Perl/Extras/5.8.9/darwin-thread-multi-2level > /System/Library/Perl/Extras/5.8.9 > /Library/Perl/5.8.8 > /Library/Perl/5.8.6 > /Library/Perl/5.8.1 > . > €€€€€€€€€€€€€€€€€€ >
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Subject: Re: [rt.cpan.org #57577] Bug installing Math::GSL, HELP PLEASE!!!!!
Date: Mon, 7 Feb 2011 16:10:01 -0800
To: bug-Math-Gsl [...] rt.cpan.org
From: Jonathan Leto <jonathan [...] leto.net>
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Subject: Re: [rt.cpan.org #57577] Bug installing Math::GSL, HELP PLEASE!!!!!
Date: Tue, 8 Feb 2011 09:43:10 +0000
To: bug-Math-Gsl [...] rt.cpan.org
From: Inti pedroso <intipedroso [...] gmail.com>
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From: hardeep.nahal [...] utoronto.ca
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Subject: Re: [rt.cpan.org #57577] Bug installing Math::GSL, HELP PLEASE!!!!!
Date: Sat, 12 Feb 2011 13:14:19 -0800
To: bug-Math-Gsl [...] rt.cpan.org
From: "Jonathan \"Duke\" Leto" <jonathan [...] leto.net>
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Howdy, Please try again with a new Math::GSL and open up new tickets if you run into problems. Thanks, Duke On Tue May 18 07:20:13 2010, intipedroso@gmail.com wrote: Show quoted text
> Dear, > I am having trouble to install Math::GSL. I really want to use it. > I had probems whne running perl Makefile.PL, which I solved by adding > the > path to the CORE header.
> > sudo perl5.8.9 Makefile.PL
> INC="/System/Library/Perl/5.8.9/darwin-thread-multi-2level/CORE" > i found this on the bugs forums of the module. Then I changed the > Build.PL > at line 108, > my %gsl_pkgcfg = ExtUtils::PkgConfig->find ('gsl'); > into > my %gsl_pkgcfg = ('modversion' => '1.13', 'cflags'=> '- > I/usr/local/include', > 'pkg' => 'gsl', 'libs' => '-L/usr/local/lib -lgsl -lgslcblas -lm' ); > > I took the information from the gsl-config because I do know why the > ExtUtils::PkgConfig could not find it but I know it is there. > Then I had problem when running ./Build >
> > sudo ./Build
> Building Math-GSL > i686-apple-darwin10-gcc-4.2.1: > /System/Library/Perl/5.8.9/darwin-thread-multi-2level/CORE: linker > input > file unused because linking not done > i686-apple-darwin10-gcc-4.2.1: -bundle not allowed with -dynamiclib > error building blib/arch/auto/Math/GSL/BLAS/BLAS.bundle file from > 'xs/BLAS_wrap.o' at inc/GSLBuilder.pm line 132. > > At this stage I just could not find out what the problem is, this goes > beyond my Perl/computing knowledge. > I have appended below the decription of the machine and of the perl I > am > using. > > I would be very very pleased if you could help me with this. thanks a > lot > for building the module and in advance for help in getting it running. > > Best Regards, > Inti Pedroso. > > > €€€€€€€€€€€€€€€€€
> > uname -a
> Darwin shiva.iop.kcl.ac.uk 10.3.0 Darwin Kernel Version 10.3.0: Fri > Feb 26 > 11:57:13 PST 2010; root:xnu-1504.3.12~1/RELEASE_X86_64 x86_64 > > €€€€€€€€€€€€€€€€€€€€€€€€€
> > perl5.8.9 -V
> Summary of my perl5 (revision 5 version 8 subversion 9) configuration: > Platform: > osname=darwin, osvers=10.0, archname=darwin-thread-multi-2level > uname='darwin neige.apple.com 10.0 darwin kernel version 10.0.0d8: > tue > may 5 19:29:59 pdt 2009; root:xnu-1437.2~2release_i386 i386 ' > config_args='-ds -e -Dprefix=/usr -Dccflags=-g -pipe -Dldflags= > -Dman3ext=3pm -Duseithreads -Duseshrplib -Dinc_version_list=none > -Dcc=gcc-4.2' > hint=recommended, useposix=true, d_sigaction=define > usethreads=define use5005threads=undef useithreads=define > usemultiplicity=define > useperlio=define d_sfio=undef uselargefiles=define usesocks=undef > use64bitint=define use64bitall=define uselongdouble=undef > usemymalloc=n, bincompat5005=undef > Compiler: > cc='gcc-4.2', ccflags ='-arch i386 -arch ppc -g -pipe -fno-common > -DPERL_DARWIN -fno-strict-aliasing -I/usr/local/include', > optimize='-Os', > cppflags='-g -pipe -fno-common -DPERL_DARWIN -fno-strict-aliasing > -I/usr/local/include' > ccversion='', gccversion='4.2.1 (Apple Inc. build 5646)', > gccosandvers='' > intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=1234 > d_longlong=define, longlongsize=8, d_longdbl=define, > longdblsize=16 > ivtype='long', ivsize=4, nvtype='double', nvsize=8, Off_t='off_t', > lseeksize=8 > alignbytes=8, prototype=define > Linker and Libraries: > ld='gcc-4.2 -mmacosx-version-min=10.6', ldflags ='-arch i386 -arch > ppc > -L/usr/local/lib' > libpth=/usr/local/lib /usr/lib > libs=-ldbm -ldl -lm -lutil -lc > perllibs=-ldl -lm -lutil -lc > libc=/usr/lib/libc.dylib, so=dylib, useshrplib=true, > libperl=libperl.dylib > gnulibc_version='' > Dynamic Linking: > dlsrc=dl_dlopen.xs, dlext=bundle, d_dlsymun=undef, ccdlflags=' ' > cccdlflags=' ', lddlflags='-arch i386 -arch ppc -bundle -undefined > dynamic_lookup -L/usr/local/lib' > > > Characteristics of this binary (from libperl): > Compile-time options: MULTIPLICITY PERL_IMPLICIT_CONTEXT > PERL_MALLOC_WRAP > USE_FAST_STDIO USE_ITHREADS USE_LARGE_FILES > USE_PERLIO USE_REENTRANT_API > Locally applied patches: > /Library/Perl/Updates/<version> comes before system perl > directories > installprivlib and installarchlib points to the Updates directory > 6576362: fixed 5.8.9 binary compatibility issue: perlio mutex not > initialized > Built under darwin > Compiled at Jun 24 2009 00:35:17 > %ENV: > > PERL5LIB=":/Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl- > live/:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > compara/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > variation/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > functgenomics/modules:/Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl- > live/:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > compara/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > variation/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > functgenomics/modules:/Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl- > live/:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > compara/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > variation/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > functgenomics/modules:/Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl- > live/:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > compara/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > variation/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > functgenomics/modules:/Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl- > live/:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > compara/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > variation/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > functgenomics/modules:/Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl- > live/:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > compara/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > variation/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > functgenomics/modules:/Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl- > live/:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > compara/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > variation/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > functgenomics/modules" > @INC: > /Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl-live/ > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > compara/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > variation/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > functgenomics/modules > /Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl-live/ > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > compara/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > variation/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > functgenomics/modules > /Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl-live/ > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > compara/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > variation/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > functgenomics/modules > /Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl-live/ > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > compara/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > variation/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > functgenomics/modules > /Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl-live/ > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > compara/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > variation/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > functgenomics/modules > /Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl-live/ > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > compara/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > variation/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > functgenomics/modules > /Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl-live/ > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > compara/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > variation/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > functgenomics/modules > /Library/Perl/Updates/5.8.9/darwin-thread-multi-2level > /Library/Perl/Updates/5.8.9 > /System/Library/Perl/5.8.9/darwin-thread-multi-2level > /System/Library/Perl/5.8.9 > /Library/Perl/5.8.9/darwin-thread-multi-2level > /Library/Perl/5.8.9 > /Network/Library/Perl/5.8.9/darwin-thread-multi-2level > /Network/Library/Perl/5.8.9 > /Network/Library/Perl > /System/Library/Perl/Extras/5.8.9/darwin-thread-multi-2level > /System/Library/Perl/Extras/5.8.9 > /Library/Perl/5.8.8 > /Library/Perl/5.8.6 > /Library/Perl/5.8.1 > . > €€€€€€€€€€€€€€€€€€
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Howdy, Please try again with a new Math::GSL and open up new tickets if you run into problems. Thanks, Duke On Tue May 18 07:20:13 2010, intipedroso@gmail.com wrote: Show quoted text
> Dear, > I am having trouble to install Math::GSL. I really want to use it. > I had probems whne running perl Makefile.PL, which I solved by adding > the > path to the CORE header.
> > sudo perl5.8.9 Makefile.PL
> INC="/System/Library/Perl/5.8.9/darwin-thread-multi-2level/CORE" > i found this on the bugs forums of the module. Then I changed the > Build.PL > at line 108, > my %gsl_pkgcfg = ExtUtils::PkgConfig->find ('gsl'); > into > my %gsl_pkgcfg = ('modversion' => '1.13', 'cflags'=> '- > I/usr/local/include', > 'pkg' => 'gsl', 'libs' => '-L/usr/local/lib -lgsl -lgslcblas -lm' ); > > I took the information from the gsl-config because I do know why the > ExtUtils::PkgConfig could not find it but I know it is there. > Then I had problem when running ./Build >
> > sudo ./Build
> Building Math-GSL > i686-apple-darwin10-gcc-4.2.1: > /System/Library/Perl/5.8.9/darwin-thread-multi-2level/CORE: linker > input > file unused because linking not done > i686-apple-darwin10-gcc-4.2.1: -bundle not allowed with -dynamiclib > error building blib/arch/auto/Math/GSL/BLAS/BLAS.bundle file from > 'xs/BLAS_wrap.o' at inc/GSLBuilder.pm line 132. > > At this stage I just could not find out what the problem is, this goes > beyond my Perl/computing knowledge. > I have appended below the decription of the machine and of the perl I > am > using. > > I would be very very pleased if you could help me with this. thanks a > lot > for building the module and in advance for help in getting it running. > > Best Regards, > Inti Pedroso. > > > €€€€€€€€€€€€€€€€€
> > uname -a
> Darwin shiva.iop.kcl.ac.uk 10.3.0 Darwin Kernel Version 10.3.0: Fri > Feb 26 > 11:57:13 PST 2010; root:xnu-1504.3.12~1/RELEASE_X86_64 x86_64 > > €€€€€€€€€€€€€€€€€€€€€€€€€
> > perl5.8.9 -V
> Summary of my perl5 (revision 5 version 8 subversion 9) configuration: > Platform: > osname=darwin, osvers=10.0, archname=darwin-thread-multi-2level > uname='darwin neige.apple.com 10.0 darwin kernel version 10.0.0d8: > tue > may 5 19:29:59 pdt 2009; root:xnu-1437.2~2release_i386 i386 ' > config_args='-ds -e -Dprefix=/usr -Dccflags=-g -pipe -Dldflags= > -Dman3ext=3pm -Duseithreads -Duseshrplib -Dinc_version_list=none > -Dcc=gcc-4.2' > hint=recommended, useposix=true, d_sigaction=define > usethreads=define use5005threads=undef useithreads=define > usemultiplicity=define > useperlio=define d_sfio=undef uselargefiles=define usesocks=undef > use64bitint=define use64bitall=define uselongdouble=undef > usemymalloc=n, bincompat5005=undef > Compiler: > cc='gcc-4.2', ccflags ='-arch i386 -arch ppc -g -pipe -fno-common > -DPERL_DARWIN -fno-strict-aliasing -I/usr/local/include', > optimize='-Os', > cppflags='-g -pipe -fno-common -DPERL_DARWIN -fno-strict-aliasing > -I/usr/local/include' > ccversion='', gccversion='4.2.1 (Apple Inc. build 5646)', > gccosandvers='' > intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=1234 > d_longlong=define, longlongsize=8, d_longdbl=define, > longdblsize=16 > ivtype='long', ivsize=4, nvtype='double', nvsize=8, Off_t='off_t', > lseeksize=8 > alignbytes=8, prototype=define > Linker and Libraries: > ld='gcc-4.2 -mmacosx-version-min=10.6', ldflags ='-arch i386 -arch > ppc > -L/usr/local/lib' > libpth=/usr/local/lib /usr/lib > libs=-ldbm -ldl -lm -lutil -lc > perllibs=-ldl -lm -lutil -lc > libc=/usr/lib/libc.dylib, so=dylib, useshrplib=true, > libperl=libperl.dylib > gnulibc_version='' > Dynamic Linking: > dlsrc=dl_dlopen.xs, dlext=bundle, d_dlsymun=undef, ccdlflags=' ' > cccdlflags=' ', lddlflags='-arch i386 -arch ppc -bundle -undefined > dynamic_lookup -L/usr/local/lib' > > > Characteristics of this binary (from libperl): > Compile-time options: MULTIPLICITY PERL_IMPLICIT_CONTEXT > PERL_MALLOC_WRAP > USE_FAST_STDIO USE_ITHREADS USE_LARGE_FILES > USE_PERLIO USE_REENTRANT_API > Locally applied patches: > /Library/Perl/Updates/<version> comes before system perl > directories > installprivlib and installarchlib points to the Updates directory > 6576362: fixed 5.8.9 binary compatibility issue: perlio mutex not > initialized > Built under darwin > Compiled at Jun 24 2009 00:35:17 > %ENV: > > PERL5LIB=":/Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl- > live/:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > compara/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > variation/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > functgenomics/modules:/Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl- > live/:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > compara/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > variation/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > functgenomics/modules:/Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl- > live/:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > compara/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > variation/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > functgenomics/modules:/Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl- > live/:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > compara/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > variation/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > functgenomics/modules:/Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl- > live/:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > compara/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > variation/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > functgenomics/modules:/Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl- > live/:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > compara/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > variation/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > functgenomics/modules:/Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl- > live/:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > compara/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > variation/modules:/Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > functgenomics/modules" > @INC: > /Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl-live/ > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > compara/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > variation/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > functgenomics/modules > /Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl-live/ > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > compara/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > variation/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > functgenomics/modules > /Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl-live/ > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > compara/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > variation/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > functgenomics/modules > /Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl-live/ > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > compara/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > variation/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > functgenomics/modules > /Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl-live/ > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > compara/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > variation/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > functgenomics/modules > /Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl-live/ > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > compara/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > variation/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > functgenomics/modules > /Users/pedrosoi/Desktop/Installed_Apps/bioperl/bioperl-live/ > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > compara/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > variation/modules > > /Users/pedrosoi/Desktop/Installed_Apps/Ensembl/v57/ensembl- > functgenomics/modules > /Library/Perl/Updates/5.8.9/darwin-thread-multi-2level > /Library/Perl/Updates/5.8.9 > /System/Library/Perl/5.8.9/darwin-thread-multi-2level > /System/Library/Perl/5.8.9 > /Library/Perl/5.8.9/darwin-thread-multi-2level > /Library/Perl/5.8.9 > /Network/Library/Perl/5.8.9/darwin-thread-multi-2level > /Network/Library/Perl/5.8.9 > /Network/Library/Perl > /System/Library/Perl/Extras/5.8.9/darwin-thread-multi-2level > /System/Library/Perl/Extras/5.8.9 > /Library/Perl/5.8.8 > /Library/Perl/5.8.6 > /Library/Perl/5.8.1 > . > €€€€€€€€€€€€€€€€€€


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