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Id: 51485
Status: new
Priority: 0/
Queue: Bio-SamTools

Owner: Nobody in particular
Requestors: keith.e.robison [...]

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Fixed in: (no value)

Subject: Missing character->value conversion in example SNP caller?
Date: Thu, 12 Nov 2009 20:54:31 -0500
To: bug-Bio-SamTools [...]
From: Keith Robison <keith.e.robison [...]>
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In the SNP caller in the EXAMPLES section, shouldn't my $qscore = substr($b->qscore,$pileup->qpos,1); instead be # qscores stored as ASCII character; subtract 33 to get quality score my $qscore = ord(substr($b->qscore,$pileup->qpos,1))-33;

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