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This queue is for tickets about the Bio-SamTools CPAN distribution.

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The Basics
Id: 50653
Status: new
Priority: 0/
Queue: Bio-SamTools

People
Owner: Nobody in particular
Requestors: m.zapatka [...] googlemail.com
Cc:
AdminCc:

Bug Information
Severity: Unimportant
Broken in: 1.05
Fixed in: (no value)



Subject: Error in gbrowse2: Method abs_ref missing
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While trying to load a custom track in gff-format the following error occurs: Can't locate object method "abs_ref" via package "Bio::DB::Sam::Segment" Please include the following or another workaround in Bio::DB::Sam::Segment # required by api sub abs_ref { shift->seq_id } Best regards, Marc
Subject: patch.txt
Download patch.txt
text/plain 250b
--- Segment.pm.bak 2009-10-19 16:12:09.000000000 +0200 +++ Segment.pm 2009-10-19 17:33:11.000000000 +0200 @@ -81,5 +81,7 @@ sub score { return; } # required by api sub class { 'sequence' } +# required by api +sub abs_ref { shift->seq_id } 1;


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