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Id: 48355
Status: new
Priority: 0/
Queue: GBrowse

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Owner: Nobody in particular
Requestors: takess [...] mi.mss.co.jp
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Severity: (no value)
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Subject: Report a bug, I tried to install GBrowse-1.997, but couldn't
Date: Fri, 31 Jul 2009 21:58:52 +0900
To: bug-GBrowse [...] rt.cpan.org
From: Sayumi TAKESHITA <takess [...] mi.mss.co.jp>
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First, I'm sorry for my poor English. Anyway, I tried to find Bio/Graphics/Browser/UserTracks.pm but I couldn't find UserTracks.pm in CPAN site and under this folder(/root/.cpan/build/GBrowse-1.997-nQSP_c/lib/Bio/Graphics/Browser/) . Is it bug? ================*INFORMATION*===================== - Distribution name and version:GBrowse-1.997 - Perl version: # perl -v This is perl, v5.8.8 built for x86_64-linux-thread-multi - Operating System vendor and version: # uname -a Linux (skip).ac.jp 2.6.18-128.el5 #1 SMP Wed Jan 21 10:41:14 EST 2009 x86_64 x86_64 x86_64 GNU/Linux ================================================== ---------------*Installation log and message*---------------- #perl -MCPAN -e 'install Bio::Graphics::Browser' (skip) Running Build test NOTE: Run ./Build reconfig to change existing configuration. /etc/httpd/conf.d/gbrowse2.conf is already installed. Please run ./Build apache_conf to see this file's recommended contents. t/01yeast.t ............... ok t/02.rearchitecture.t ..... ok t/03.render.t ............. Can't locate Bio/Graphics/Browser/UserTracks.pm in @INC (@INC contains: /root/.cpan/build/GBrowse-1.997-nQSP_c/t/../lib t /root/.cpan/build/GBrowse-1.997-nQSP_c/t/testdata /root/.cpan/build/GBrowse-1.997-nQSP_c/blib/lib /root/.cpan/build/GBrowse-1.997-nQSP_c/blib/arch /root/.cpan/build/GBrowse-1.997-nQSP_c/install_util /usr/lib64/perl5/site_perl/5.8.8/x86_64-linux-thread-multi /usr/lib64/perl5/site_perl/5.8.7/x86_64-linux-thread-multi /usr/lib64/perl5/site_perl/5.8.6/x86_64-linux-thread-multi /usr/lib64/perl5/site_perl/5.8.5/x86_64-linux-thread-multi /usr/lib/perl5/site_perl/5.8.8 /usr/lib/perl5/site_perl/5.8.7 /usr/lib/perl5/site_perl/5.8.6 /usr/lib/perl5/site_perl/5.8.5 /usr/lib/perl5/site_perl /usr/lib64/perl5/vendor_perl/5.8.8/x86_64-linux-thread-multi /usr/lib64/perl5/vendor_perl/5.8.7/x86_64-linux-thread-multi /usr/lib64/perl5/vendor_perl/5.8.6/x86_64-linux-thread-multi /usr/lib64/perl5/vendor_perl/5.8.5/x86_64-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.8 /usr/lib/perl5/vendor_perl/5.8.7 /usr/lib/perl5/vendor_perl/5.8.6 /usr/lib/perl5/vendor_perl/5.8.5 /usr/lib/perl5/vendor_perl /usr/lib64/perl5/5.8.8/x86_64-linux-thread-multi /usr/lib/perl5/5.8.8 .) at /root/.cpan/build/GBrowse-1.997-nQSP_c/t/../lib/Bio/Graphics/Browser/Render.pm line 23, <DATA> line 192. BEGIN failed--compilation aborted at /root/.cpan/build/GBrowse-1.997-nQSP_c/t/../lib/Bio/Graphics/Browser/Render.pm line 23, <DATA> line 192. Compilation failed in require at (eval 62) line 3, <DATA> line 192. ...propagated at /usr/lib/perl5/5.8.8/base.pm line 85, <DATA> line 192. BEGIN failed--compilation aborted at /root/.cpan/build/GBrowse-1.997-nQSP_c/t/../lib/Bio/Graphics/Browser/Render/HTML.pm line 5, <DATA> line 192. Compilation failed in require at t/03.render.t line 48, <DATA> line 192. BEGIN failed--compilation aborted at t/03.render.t line 48, <DATA> line 192. t/03.render.t ............. Dubious, test returned 2 (wstat 512, 0x200) Failed 148/148 subtests t/04.remoteserver.t ....... Can't locate Bio/Graphics/Browser/UserTracks.pm in @INC (@INC contains: /root/.cpan/build/GBrowse-1.997-nQSP_c/t/../lib t /root/.cpan/build/GBrowse-1.997-nQSP_c/blib/lib /root/.cpan/build/GBrowse-1.997-nQSP_c/blib/arch /root/.cpan/build/GBrowse-1.997-nQSP_c/install_util /usr/lib64/perl5/site_perl/5.8.8/x86_64-linux-thread-multi /usr/lib64/perl5/site_perl/5.8.7/x86_64-linux-thread-multi /usr/lib64/perl5/site_perl/5.8.6/x86_64-linux-thread-multi /usr/lib64/perl5/site_perl/5.8.5/x86_64-linux-thread-multi /usr/lib/perl5/site_perl/5.8.8 /usr/lib/perl5/site_perl/5.8.7 /usr/lib/perl5/site_perl/5.8.6 /usr/lib/perl5/site_perl/5.8.5 /usr/lib/perl5/site_perl /usr/lib64/perl5/vendor_perl/5.8.8/x86_64-linux-thread-multi /usr/lib64/perl5/vendor_perl/5.8.7/x86_64-linux-thread-multi /usr/lib64/perl5/vendor_perl/5.8.6/x86_64-linux-thread-multi /usr/lib64/perl5/vendor_perl/5.8.5/x86_64-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.8 /usr/lib/perl5/vendor_perl/5.8.7 /usr/lib/perl5/vendor_perl/5.8.6 /usr/lib/perl5/vendor_perl/5.8.5 /usr/lib/perl5/vendor_perl /usr/lib64/perl5/5.8.8/x86_64-linux-thread-multi /usr/lib/perl5/5.8.8 .) at /root/.cpan/build/GBrowse-1.997-nQSP_c/t/../lib/Bio/Graphics/Browser/Render.pm line 23, <DATA> line 192. BEGIN failed--compilation aborted at /root/.cpan/build/GBrowse-1.997-nQSP_c/t/../lib/Bio/Graphics/Browser/Render.pm line 23, <DATA> line 192. Compilation failed in require at (eval 62) line 3, <DATA> line 192. ...propagated at /usr/lib/perl5/5.8.8/base.pm line 85, <DATA> line 192. BEGIN failed--compilation aborted at /root/.cpan/build/GBrowse-1.997-nQSP_c/t/../lib/Bio/Graphics/Browser/Render/HTML.pm line 5, <DATA> line 192. Compilation failed in require at t/04.remoteserver.t line 45, <DATA> line 192. BEGIN failed--compilation aborted at t/04.remoteserver.t line 45, <DATA> line 192. t/04.remoteserver.t ....... Dubious, test returned 2 (wstat 512, 0x200) Failed 43/43 subtests t/05.deferredrendering.t .. Can't locate Bio/Graphics/Browser/UserTracks.pm in @INC (@INC contains: /root/.cpan/build/GBrowse-1.997-nQSP_c/t/../lib t /home/lstein/projects/bioperl-live /root/.cpan/build/GBrowse-1.997-nQSP_c/blib/lib /root/.cpan/build/GBrowse-1.997-nQSP_c/blib/arch /root/.cpan/build/GBrowse-1.997-nQSP_c/install_util /usr/lib64/perl5/site_perl/5.8.8/x86_64-linux-thread-multi /usr/lib64/perl5/site_perl/5.8.7/x86_64-linux-thread-multi /usr/lib64/perl5/site_perl/5.8.6/x86_64-linux-thread-multi /usr/lib64/perl5/site_perl/5.8.5/x86_64-linux-thread-multi /usr/lib/perl5/site_perl/5.8.8 /usr/lib/perl5/site_perl/5.8.7 /usr/lib/perl5/site_perl/5.8.6 /usr/lib/perl5/site_perl/5.8.5 /usr/lib/perl5/site_perl /usr/lib64/perl5/vendor_perl/5.8.8/x86_64-linux-thread-multi /usr/lib64/perl5/vendor_perl/5.8.7/x86_64-linux-thread-multi /usr/lib64/perl5/vendor_perl/5.8.6/x86_64-linux-thread-multi /usr/lib64/perl5/vendor_perl/5.8.5/x86_64-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.8 /usr/lib/perl5/vendor_perl/5.8.7 /usr/lib/perl5/vendor_perl/5.8.6 /usr/lib/perl5/vendor_perl/5.8.5 /usr/lib/perl5/vendor_perl /usr/lib64/perl5/5.8.8/x86_64-linux-thread-multi /usr/lib/perl5/5.8.8 .) at /root/.cpan/build/GBrowse-1.997-nQSP_c/t/../lib/Bio/Graphics/Browser/Render.pm line 23, <DATA> line 192. BEGIN failed--compilation aborted at /root/.cpan/build/GBrowse-1.997-nQSP_c/t/../lib/Bio/Graphics/Browser/Render.pm line 23, <DATA> line 192. Compilation failed in require at (eval 62) line 3, <DATA> line 192. ...propagated at /usr/lib/perl5/5.8.8/base.pm line 85, <DATA> line 192. BEGIN failed--compilation aborted at /root/.cpan/build/GBrowse-1.997-nQSP_c/t/../lib/Bio/Graphics/Browser/Render/HTML.pm line 5, <DATA> line 192. Compilation failed in require at t/05.deferredrendering.t line 44, <DATA> line 192. BEGIN failed--compilation aborted at t/05.deferredrendering.t line 44, <DATA> line 192. t/05.deferredrendering.t .. Dubious, test returned 2 (wstat 512, 0x200) Failed 19/19 subtests t/06.featuresearch.t ...... Can't locate Bio/Graphics/Browser/UserTracks.pm in @INC (@INC contains: /root/.cpan/build/GBrowse-1.997-nQSP_c/t/../lib t /home/lstein/projects/bioperl-live /root/.cpan/build/GBrowse-1.997-nQSP_c/blib/lib /root/.cpan/build/GBrowse-1.997-nQSP_c/blib/arch /root/.cpan/build/GBrowse-1.997-nQSP_c/install_util /usr/lib64/perl5/site_perl/5.8.8/x86_64-linux-thread-multi /usr/lib64/perl5/site_perl/5.8.7/x86_64-linux-thread-multi /usr/lib64/perl5/site_perl/5.8.6/x86_64-linux-thread-multi /usr/lib64/perl5/site_perl/5.8.5/x86_64-linux-thread-multi /usr/lib/perl5/site_perl/5.8.8 /usr/lib/perl5/site_perl/5.8.7 /usr/lib/perl5/site_perl/5.8.6 /usr/lib/perl5/site_perl/5.8.5 /usr/lib/perl5/site_perl /usr/lib64/perl5/vendor_perl/5.8.8/x86_64-linux-thread-multi /usr/lib64/perl5/vendor_perl/5.8.7/x86_64-linux-thread-multi /usr/lib64/perl5/vendor_perl/5.8.6/x86_64-linux-thread-multi /usr/lib64/perl5/vendor_perl/5.8.5/x86_64-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.8 /usr/lib/perl5/vendor_perl/5.8.7 /usr/lib/perl5/vendor_perl/5.8.6 /usr/lib/perl5/vendor_perl/5.8.5 /usr/lib/perl5/vendor_perl /usr/lib64/perl5/5.8.8/x86_64-linux-thread-multi /usr/lib/perl5/5.8.8 .) at /root/.cpan/build/GBrowse-1.997-nQSP_c/t/../lib/Bio/Graphics/Browser/Render.pm line 23, <DATA> line 192. BEGIN failed--compilation aborted at /root/.cpan/build/GBrowse-1.997-nQSP_c/t/../lib/Bio/Graphics/Browser/Render.pm line 23, <DATA> line 192. Compilation failed in require at /root/.cpan/build/GBrowse-1.997-nQSP_c/t/../lib/Bio/Graphics/Browser/RenderPanels.pm line 9, <DATA> line 192. BEGIN failed--compilation aborted at /root/.cpan/build/GBrowse-1.997-nQSP_c/t/../lib/Bio/Graphics/Browser/RenderPanels.pm line 9, <DATA> line 192. Compilation failed in require at /root/.cpan/build/GBrowse-1.997-nQSP_c/t/../lib/Bio/Graphics/Browser/Render/Slave.pm line 16, <DATA> line 192. BEGIN failed--compilation aborted at /root/.cpan/build/GBrowse-1.997-nQSP_c/t/../lib/Bio/Graphics/Browser/Render/Slave.pm line 16, <DATA> line 192. Compilation failed in require at t/06.featuresearch.t line 42, <DATA> line 192. BEGIN failed--compilation aborted at t/06.featuresearch.t line 42, <DATA> line 192. t/06.featuresearch.t ...... Dubious, test returned 2 (wstat 512, 0x200) Failed 25/25 subtests t/07.karyotype.t .......... ok t/08.calign.t ............. ok Test Summary Report ------------------- t/03.render.t (Wstat: 512 Tests: 0 Failed: 0) Non-zero exit status: 2 Parse errors: Bad plan. You planned 148 tests but ran 0. t/04.remoteserver.t (Wstat: 512 Tests: 0 Failed: 0) Non-zero exit status: 2 Parse errors: Bad plan. You planned 43 tests but ran 0. t/05.deferredrendering.t (Wstat: 512 Tests: 0 Failed: 0) Non-zero exit status: 2 Parse errors: Bad plan. You planned 19 tests but ran 0. t/06.featuresearch.t (Wstat: 512 Tests: 0 Failed: 0) Non-zero exit status: 2 Parse errors: Bad plan. You planned 25 tests but ran 0. Files=8, Tests=106, 4 wallclock secs ( 0.05 usr 0.04 sys + 2.56 cusr 0.39 csys = 3.04 CPU) Result: FAIL Failed 4/8 test programs. 0/106 subtests failed. LDS/GBrowse-1.997.tar.gz ./Build test -- NOT OK //hint// to see the cpan-testers results for installing this module, try: reports LDS/GBrowse-1.997.tar.gz Running Build install make test had returned bad status, won't install without force # ----------------------------------------------------------------- -- Sayumi Takeshita


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