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This queue is for tickets about the bioperl CPAN distribution.

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The Basics
Id: 31796
Status: rejected
Priority: 0/
Queue: bioperl

People
Owner: Nobody in particular
Requestors: brandi.cantarel [...] afmb.univ-mrs.fr
Cc:
AdminCc:

Bug Information
Severity: (no value)
Broken in: (no value)
Fixed in: (no value)



Subject: SeqIO
Date: Fri, 21 Dec 2007 13:06:39 +0100
To: bug-bioperl [...] rt.cpan.org
From: Brandi Cantarel <brandi.cantarel [...] afmb.univ-mrs.fr>
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I might have found a bug in SeqIO in bioperl. Well it is actually a memory leak. When I try to load large file, I can step through the first 10K or so sequences (using next_seq) but then it just hangs..... If this bug is fixed please let me know. Brandi Cantarel -- This message has been scanned for viruses and dangerous content by MailScanner, and is believed to be clean.
From: bix [...] sendu.me.uk
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On Fri Dec 21 07:07:30 2007, brandi.cantarel@afmb.univ-mrs.fr wrote: Show quoted text
> I might have found a bug in SeqIO in bioperl. Well it is actually a > memory leak. When I try to load large file, I can step through the > first 10K or so sequences (using next_seq) but then it just hangs..... > > If this bug is fixed please let me know.
Please use http://bugzilla.bioperl.org/ to tell us about this bug. After creating a bug report you'll be able to attach the script in which you encounter the problem, which we need to diagnose this issue.
Need more information, was it ever submitted to bugzilla?
No response.


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