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This queue is for tickets about the bioperl CPAN distribution.

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The Basics
Id: 29533
Status: resolved
Priority: 0/
Queue: bioperl

People
Owner: Nobody in particular
Requestors: MIKEWONG [...] cpan.org
Cc:
AdminCc:

Bug Information
Severity: Critical
Broken in: 1.5.2_102
Fixed in: (no value)



Subject: Bio::SeqIO::interpro depends on XML::DOM::XPath
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Hi! There's a simple error in Bio::SeqIO::interpro in bioperl 1.5.2_102. Bio/SeqIO/interpro.pm needs the following inserted in line 75: use XML::DOM::XPath; to supply the findnodes() method. Otherwise I get the error: Can't locate object method "findnodes" via package "XML::DOM::Document" at /share/apps/perl/lib/site_perl/5.8.8/Bio/SeqIO/interpro.pm line 137, <GEN0> line 9. Thanks!
Subject: [O|B|F Helpdesk #376] AutoReply: [rt.cpan.org #29533] Bio::SeqIO::interpro depends on XML::DOM::XPath
Date: Fri, 21 Sep 2007 10:11:20 -0400
To: bug-bioperl [...] rt.cpan.org
From: "OBF Helpdesk Support Queue via RT" <support [...] helpdesk.open-bio.org>
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Hello, This message has been automatically generated in response to the creation of a support ticket regarding: "[rt.cpan.org #29533] Bio::SeqIO::interpro depends on XML::DOM::XPath", a summary of which appears below. We use this ticketing system to manage support requests and to avoid both duplication of effort as well as requests that "fall through the cracks". There is no need to reply to this message right now. Your ticket has been assigned an ID of [O|B|F Helpdesk #376]. Please include the string: [O|B|F Helpdesk #376] in the subject line of all future correspondence about this issue. This will keep things nice and organized within our support database. Simply replying to one of these messages will also work -- all history and previous correspondence with our admin group will be preserved. Thanks! If you are requesting a developer account please read the important note below. If you find you are missing some of the required information just reply to this message with the extra info and our system will automatically collect it. Thank you, support@helpdesk.open-bio.org ************************************************************* *** Special note for people requesting developer accounts ** ************************************************************* To create a OBF developer account we need ALL of the following information: (1) The user's full name (2) A valid email address (3) What unix username he/she desires (4) OBF project/code repository name(s) (5) The name of an existing developer who can vouch for the new user ------------------------------------------------------------------------- Your message is enclosed below: ------------------------------------------------------------------------- Fri Sep 21 04:06:58 2007: Request 29533 was acted upon. Transaction: Ticket created by MIKEWONG Queue: bioperl Subject: Bio::SeqIO::interpro depends on XML::DOM::XPath Broken in: (no value) Severity: Critical Owner: Nobody Requestors: MIKEWONG@cpan.org Status: new Ticket <URL: http://rt.cpan.org/Ticket/Display.html?id=29533 > Hi! There's a simple error in Bio::SeqIO::interpro in bioperl 1.5.2_102. Bio/SeqIO/interpro.pm needs the following inserted in line 75: use XML::DOM::XPath; to supply the findnodes() method. Otherwise I get the error: Can't locate object method "findnodes" via package "XML::DOM::Document" at /share/apps/perl/lib/site_perl/5.8.8/Bio/SeqIO/interpro.pm line 137, <GEN0> line 9. Thanks!
CC: chris [...] bioteam.net, heikki [...] sanbi.ac.za, hlapp [...] gmx.net, jason [...] bioperl.org
Subject: [O|B|F Helpdesk #376] [rt.cpan.org #29533] Bio::SeqIO::interpro depends on XML::DOM::XPath
Date: Fri, 21 Sep 2007 10:27:04 -0400
To: bug-bioperl [...] rt.cpan.org
From: "Mauricio Herrera Cuadra via RT" <support [...] helpdesk.open-bio.org>
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Hi Mike, The proper place to submit this fix is the bioperl-l@lists.open-bio.org mailing list or the OBF Bugzilla queue at: http://bugzilla.open-bio.org/, this RT system is mainly for sysadmin activities rather than for tracking code changes. Would you be so kind to re-send your request to one of the places above? Thanks for the heads up! :) Regards, Mauricio.
From: cjfields [...] uiuc.edu
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On Fri Sep 21 10:28:52 2007, support@helpdesk.open-bio.org wrote: Show quoted text
> Hi Mike, > > The proper place to submit this fix is the bioperl-l@lists.open-bio.org > mailing list or the OBF Bugzilla queue at: > http://bugzilla.open-bio.org/, this RT system is mainly for sysadmin > activities rather than for tracking code changes. Would you be so kind > to re-send your request to one of the places above? Thanks for the heads > up! :) > > Regards, > Mauricio.
This has been fixed. I'll get the CPAN maintainer to close this out.
resolved, closing out


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