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This queue is for tickets about the Bio-Grep CPAN distribution.

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The Basics
Id: 28720
Status: resolved
Priority: 0/
Queue: Bio-Grep

People
Owner: Nobody in particular
Requestors: westerman [...] purdue.edu
Cc:
AdminCc:

Bug Information
Severity: Wishlist
Broken in: (no value)
Fixed in: v0.9.0



Subject: Non-verbose mode for Vmatch
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The call to vmatch includes the "-v" (verbose) option. It would be nice to be able to turn this this off via a setting. This isn't a critical request since stdout can be dumped to /dev/null but, still, it is better not to have do that step. Thank you.
From: westerman [...] purdue.edu
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On Tue Aug 07 13:42:55 2007, westerman wrote: Show quoted text
> The call to vmatch includes the "-v" (verbose) option. It would be nice > to be able to turn this this off via a setting. This isn't a critical > request since stdout can be dumped to /dev/null but, still, it is better > not to have do that step. Thank you. >
Oops. I meant the call to 'mkvtree' which is the creation of vmatch databases. The specific lines are: if ($alphabet eq 'protein') { $alphabet_specific_arguments = ' -protein -pl -allout -v '; } elsif ($alphabet eq 'dna') { $alphabet_specific_arguments = ' -dna -pl 3 -allout -v '; }
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added in v0.9.0. non-verbose now default. to turn verbose mode on: $sbe->generate_database({ file => $file, verbose => 1 });


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