Skip Menu |

This queue is for tickets about the bioperl CPAN distribution.

Report information
The Basics
Id: 17505
Status: resolved
Priority: 0/
Queue: bioperl

Owner: Nobody in particular
Requestors: djh [...]

Bug Information
Severity: Critical
Broken in: 1.4
Fixed in: (no value)

Subject: fails to install
Download (untitled) / with headers
text/plain 2.6k
result of failed make test is attached. System configuration below: Summary of my perl5 (revision 5 version 8 subversion 6) configuration: Platform: osname=linux, osvers=2.6.9, archname=i586-linux-thread-multi uname='linux g226 2.6.9 #1 smp tue jun 28 14:58:56 utc 2005 i686 i686 i386 gnulinux ' config_args='-ds -e -Dprefix=/usr -Dvendorprefix=/usr -Dinstallusrbinperl -Dusethreads -Di_db -Di_dbm -Di_ndbm -Di_gdbm -Duseshrplib=true -Doptimize=-O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -g -Wall -pipe' hint=recommended, useposix=true, d_sigaction=define usethreads=define use5005threads=undef useithreads=define usemultiplicity=define useperlio=define d_sfio=undef uselargefiles=define usesocks=undef use64bitint=undef use64bitall=undef uselongdouble=undef usemymalloc=n, bincompat5005=undef Compiler: cc='cc', ccflags ='-D_REENTRANT -D_GNU_SOURCE -DTHREADS_HAVE_PIDS -DDEBUGGING -fno-strict-aliasing -pipe -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64', optimize='-O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -g -Wall -pipe', cppflags='-D_REENTRANT -D_GNU_SOURCE -DTHREADS_HAVE_PIDS -DDEBUGGING -fno-strict-aliasing -pipe' ccversion='', gccversion='3.3.5 20050117 (prerelease) (SUSE Linux)', gccosandvers='' intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=1234 d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=12 ivtype='long', ivsize=4, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8 alignbytes=4, prototype=define Linker and Libraries: ld='cc', ldflags ='' libpth=/lib /usr/lib /usr/local/lib libs=-lnsl -ldl -lm -lcrypt -lutil -lpthread -lc perllibs=-lnsl -ldl -lm -lcrypt -lutil -lpthread -lc libc=, so=so, useshrplib=true, gnulibc_version='2.3.4' Dynamic Linking: dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E -Wl,-rpath,/usr/lib/perl5/5.8.6/i586-linux-thread-multi/CORE' cccdlflags='-fPIC', lddlflags='-shared' Characteristics of this binary (from libperl): Compile-time options: DEBUGGING MULTIPLICITY USE_ITHREADS USE_LARGE_FILES PERL_IMPLICIT_CONTEXT Locally applied patches: SPRINTF0 - fixes for sprintf formatting issues - CVE-2005-3962 Built under linux Compiled at Dec 17 2005 03:23:29 %ENV: PERL5LIB="/home/dhoworth/progs/modules" PERLDOC_PAGER="vi" @INC: /home/dhoworth/progs/modules /usr/lib/perl5/5.8.6/i586-linux-thread-multi /usr/lib/perl5/5.8.6 /usr/lib/perl5/site_perl/5.8.6/i586-linux-thread-multi /usr/lib/perl5/site_perl/5.8.6 /usr/lib/perl5/site_perl /usr/lib/perl5/vendor_perl/5.8.6/i586-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.6 /usr/lib/perl5/vendor_perl .
Subject: make_test.out
Download make_test.out
application/octet-stream 7.7k

Message body not shown because it is not plain text.

Newer version of Bioperl released, shouldn't have those problems.

This service is sponsored and maintained by Best Practical Solutions and runs on infrastructure.

Please report any issues with to