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This queue is for tickets about the bioperl CPAN distribution.

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The Basics
Id: 122611
Status: new
Priority: 0/
Queue: bioperl

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Owner: Nobody in particular
Requestors: CSCHWENZ [...] cpan.org
Cc:
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Bug Information
Severity: Normal
Broken in: 1.007001
Fixed in: (no value)



Subject: Perl deprecation warning in Bio::DB::GFF
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t/LiveSeq/Mutator.t .................... ok t/LocalDB/BioDBGFF.t ................... 1/275 File::Glob::glob() will disappear in perl 5.30. Use File::Glob::bsd_glob() instead. at Bio/DB/GFF.pm line 2000. You are loading a Bio::DB::GFF database with GFF3 formatted data. While this will likely work fine, the Bio::DB::GFF schema does not always faithfully capture the complexity represented in GFF3 files. Unless you have a specific reason for using Bio::DB::GFF, we suggest that you use a Bio::DB::SeqFeature::Store database and its corresponding loader, bp_seqfeature_load.pl. t/LocalDB/BioDBGFF.t ................... ok


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